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  5. Sobic.008G131300.1

Sobic.008G131300.1


Description : Pectin lyase-like superfamily protein


Gene families : OG_01_0020625 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0020625_tree

Sequence : cds (download), rna (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.008G131300.1
Neighborhood Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.008G131300.1
Cluster Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_26
Cluster Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_20


Type GO Term Name Evidence Source
MF GO:0030599 pectinesterase activity ISM GOs from InterProScan
BP GO:0042545 cell wall modification ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR012334 Pectin_lyas_fold Gene3D 117 427
IPR033131 Pectinesterase_Asp_AS ProSitePatterns 277 286
IPR000070 Pectinesterase_cat Pfam 124 422
IPR011050 Pectin_lyase_fold/virulence SUPERFAMILY 117 425
HMM Family HMM Length Query Length e-Value Query Start Query End
CE8 288 433 1.6e-90 123 419
No external refs found!