Sobic.008G131800.1

Description : zinc knuckle (CCHC-type) family protein

Gene families : OG_01_0003196 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0003196_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.008G131800.1
Neighborhood	Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.008G131800.1
Cluster	Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_62
Cluster	Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_188

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	ISM	GOs from InterProScan
MF	GO:0005488	binding	None	Extended
MF	GO:0008270	zinc ion binding	ISM	GOs from InterProScan
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR036875	Znf_CCHC_sf	SUPERFAMILY	1041	1065
IPR001878	Znf_CCHC	SMART	1046	1062
IPR021846	NFACT-C	Pfam	1107	1198
IPR008532	NFACT_RNA-bd	Pfam	575	686
IPR001878	Znf_CCHC	ProSiteProfiles	1047	1062
IPR001878	Znf_CCHC	Pfam	1046	1062

No CAZYmes available for this sequence

External Links

No external refs found!