- Species
- Tools
- Expression Profiles
- Compare profiles
- Create heatmap
- Export expression levels
- Expression Specificity
- Compare specificities
- Find specific profiles
- Co-expression Networks
- Create custom network
- Find enriched clusters
- Search
Description : Ankyrin repeat family protein
Gene families : OG_01_0021667 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0021667_tree
Sequence : cds (download), rna (download), protein (download)
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.008G138200.1 | |
| Neighborhood | Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.008G138200.1 | No neighbors in network |
| Cluster | Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_251 |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003676 | nucleic acid binding | ISM | GOs from InterProScan |
| MF | GO:0003723 | RNA binding | ISM | GOs from InterProScan |
| MF | GO:0005515 | protein binding | ISM | GOs from InterProScan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No Predicted GO terms available for this sequence |
| InterPro domains | Description | Source | Start | Stop |
|---|---|---|---|---|
| IPR002110 | Ankyrin_rpt | ProSiteProfiles | 385 | 417 |
| IPR002110 | Ankyrin_rpt | ProSiteProfiles | 105 | 137 |
| IPR002110 | Ankyrin_rpt | ProSiteProfiles | 281 | 313 |
| IPR036770 | Ankyrin_rpt-contain_sf | Gene3D | 243 | 438 |
| IPR036770 | Ankyrin_rpt-contain_sf | Gene3D | 20 | 218 |
| IPR002110 | Ankyrin_rpt | SMART | 281 | 310 |
| IPR002110 | Ankyrin_rpt | SMART | 67 | 96 |
| IPR002110 | Ankyrin_rpt | SMART | 351 | 380 |
| IPR002110 | Ankyrin_rpt | SMART | 385 | 414 |
| IPR002110 | Ankyrin_rpt | SMART | 314 | 347 |
| IPR002110 | Ankyrin_rpt | SMART | 105 | 134 |
| IPR036770 | Ankyrin_rpt-contain_sf | SUPERFAMILY | 34 | 431 |
| IPR025605 | OST-HTH/LOTUS_dom | ProSiteProfiles | 669 | 747 |
| IPR002110 | Ankyrin_rpt | Pfam | 329 | 415 |
| IPR002110 | Ankyrin_rpt | Pfam | 69 | 132 |
| IPR017907 | Znf_RING_CS | ProSitePatterns | 1000 | 1009 |
| IPR000504 | RRM_dom | ProSiteProfiles | 533 | 613 |
| IPR000504 | RRM_dom | SMART | 534 | 609 |
| IPR012677 | Nucleotide-bd_a/b_plait_sf | Gene3D | 492 | 617 |
| IPR000504 | RRM_dom | Pfam | 535 | 605 |
| IPR035979 | RBD_domain_sf | SUPERFAMILY | 521 | 615 |
| IPR041966 | LOTUS-like | Gene3D | 685 | 737 |
| IPR025605 | OST-HTH/LOTUS_dom | Pfam | 685 | 732 |
No CAZYmes available for this sequence
| No external refs found! |