Sobic.009G005400.1

Description : peroxisomal ABC transporter 1

Gene families : OG_01_0000674 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0000674_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.009G005400.1
Neighborhood	Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.009G005400.1
Cluster	Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_148
Cluster	Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_201

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005215	transporter activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	ISM	GOs from InterProScan
BP	GO:0006810	transport	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009987	cellular process	None	Extended
MF	GO:0015399	primary active transmembrane transporter activity	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0022804	active transmembrane transporter activity	None	Extended
MF	GO:0022857	transmembrane transporter activity	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0042626	ATPase-coupled transmembrane transporter activity	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0055085	transmembrane transport	ISM	GOs from InterProScan
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:0140359	ABC-type transporter activity	ISM	GOs from InterProScan
MF	GO:0140657	ATP-dependent activity	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR036640	ABC1_TM_sf	SUPERFAMILY	753	996
IPR036640	ABC1_TM_sf	Gene3D	87	420
IPR027417	P-loop_NTPase	Gene3D	1061	1306
IPR027417	P-loop_NTPase	SUPERFAMILY	439	648
IPR003439	ABC_transporter-like_ATP-bd	Pfam	461	606
IPR017871	ABC_transporter-like_CS	ProSitePatterns	578	592
IPR011527	ABC1_TM_dom	ProSiteProfiles	755	993
IPR017871	ABC_transporter-like_CS	ProSitePatterns	1235	1249
IPR003439	ABC_transporter-like_ATP-bd	Pfam	1110	1263
IPR027417	P-loop_NTPase	SUPERFAMILY	1081	1295
IPR036640	ABC1_TM_sf	SUPERFAMILY	106	416
IPR003439	ABC_transporter-like_ATP-bd	ProSiteProfiles	1092	1316
IPR011527	ABC1_TM_dom	ProSiteProfiles	182	339
IPR003593	AAA+_ATPase	SMART	1117	1305
IPR003593	AAA+_ATPase	SMART	469	648
IPR011527	ABC1_TM_dom	Pfam	91	357
IPR011527	ABC1_TM_dom	Pfam	742	1007
IPR027417	P-loop_NTPase	Gene3D	435	680
IPR003439	ABC_transporter-like_ATP-bd	ProSiteProfiles	444	675

No CAZYmes available for this sequence

External Links

No external refs found!

Sobic.009G005400.1

Expression Profile

Co-expression Networks

Functional Annotation