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  5. Sobic.009G005700.1

Sobic.009G005700.1


Description : Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain


Gene families : OG_01_0002930 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0002930_tree

Sequence : cds (download), rna (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.009G005700.1
Neighborhood Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.009G005700.1
Cluster Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_302
Cluster Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_236


Type GO Term Name Evidence Source
MF GO:0046872 metal ion binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR000306 Znf_FYVE SMART 422 491
IPR000408 Reg_chr_condens ProSiteProfiles 148 202
IPR000408 Reg_chr_condens ProSiteProfiles 96 147
IPR009091 RCC1/BLIP-II Gene3D 159 252
IPR009091 RCC1/BLIP-II Gene3D 5 158
IPR000408 Reg_chr_condens ProSiteProfiles 203 254
IPR011011 Znf_FYVE_PHD SUPERFAMILY 425 497
IPR027988 BRX_N Pfam 674 704
IPR017455 Znf_FYVE-rel ProSiteProfiles 428 490
IPR000408 Reg_chr_condens ProSitePatterns 241 251
IPR000306 Znf_FYVE Pfam 424 489
IPR000408 Reg_chr_condens ProSiteProfiles 320 371
IPR013591 Brevis_radix_dom ProSiteProfiles 844 899
IPR000408 Reg_chr_condens PRINTS 309 327
IPR000408 Reg_chr_condens PRINTS 205 219
IPR000408 Reg_chr_condens PRINTS 98 114
IPR000408 Reg_chr_condens PRINTS 148 164
IPR000408 Reg_chr_condens PRINTS 367 388
IPR000408 Reg_chr_condens PRINTS 189 205
IPR000408 Reg_chr_condens Pfam 203 251
IPR000408 Reg_chr_condens Pfam 319 368
IPR000408 Reg_chr_condens Pfam 148 199
IPR000408 Reg_chr_condens Pfam 373 420
IPR000408 Reg_chr_condens Pfam 95 144
IPR000408 Reg_chr_condens Pfam 268 316
IPR009091 RCC1/BLIP-II SUPERFAMILY 33 425
IPR013591 Brevis_radix_dom Pfam 844 898
IPR013083 Znf_RING/FYVE/PHD Gene3D 421 502
IPR000408 Reg_chr_condens ProSitePatterns 189 199
IPR000408 Reg_chr_condens ProSiteProfiles 268 319
IPR009091 RCC1/BLIP-II Gene3D 253 420
IPR000408 Reg_chr_condens ProSiteProfiles 372 423

No CAZYmes available for this sequence

No external refs found!