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  5. Sobic.009G025200.1

Sobic.009G025200.1


Description : ubiquitin-protein ligase 4


Gene families : OG_01_0009174 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0009174_tree

Sequence : cds (download), rna (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.009G025200.1
Neighborhood Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.009G025200.1
Cluster Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_18
Cluster Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_178


Type GO Term Name Evidence Source
MF GO:0004842 ubiquitin-protein transferase activity ISM GOs from InterProScan
BP GO:0006511 ubiquitin-dependent protein catabolic process ISM GOs from InterProScan
MF GO:0061630 ubiquitin protein ligase activity ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR000569 HECT_dom SMART 993 1365
IPR011989 ARM-like Gene3D 21 493
IPR035983 Hect_E3_ubiquitin_ligase SUPERFAMILY 972 1358
IPR000569 HECT_dom Pfam 1051 1365
IPR000569 HECT_dom ProSiteProfiles 1006 1365
IPR045322 HECTD1/TRIP12-like PANTHER 4 1365
IPR000569 HECT_dom CDD 982 1363
IPR016024 ARM-type_fold SUPERFAMILY 26 443

No CAZYmes available for this sequence

No external refs found!