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Description : Pentatricopeptide repeat (PPR) superfamily protein
Gene families : OG_01_0015886 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0015886_tree
Sequence : cds (download), rna (download), protein (download)
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.009G031300.1 | |
| Neighborhood | Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.009G031300.1 | |
| Cluster | Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_125 | |
| Cluster | Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_37 |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0005515 | protein binding | ISM | GOs from InterProScan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No Predicted GO terms available for this sequence |
| InterPro domains | Description | Source | Start | Stop |
|---|---|---|---|---|
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 168 | 202 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 62 | 230 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 299 | 331 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 404 | 435 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 575 | 639 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 338 | 372 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 303 | 337 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 373 | 407 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 436 | 504 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 367 | 435 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 297 | 366 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 505 | 574 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 231 | 296 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 583 | 617 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 167 | 216 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 337 | 386 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 514 | 561 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 583 | 629 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 235 | 281 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 442 | 490 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 478 | 512 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 268 | 302 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 408 | 442 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 548 | 582 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 513 | 547 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 136 | 169 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 515 | 549 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 306 | 338 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 270 | 304 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 481 | 513 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 445 | 478 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 340 | 374 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 236 | 269 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 410 | 444 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 170 | 203 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 376 | 409 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 443 | 477 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 233 | 267 |
No CAZYmes available for this sequence
| No external refs found! |