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  5. Sobic.009G036900.1

Sobic.009G036900.1


Description : RNA-binding (RRM/RBD/RNP motifs) family protein


Gene families : OG_01_0008761 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0008761_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.009G036900.1
Neighborhood Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.009G036900.1
Cluster Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_143
Cluster Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_76


Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding ISM GOs from InterProScan
MF GO:0003723 RNA binding ISM GOs from InterProScan
MF GO:0003729 mRNA binding ISM GOs from InterProScan
CC GO:0005634 nucleus ISM GOs from InterProScan
CC GO:0005737 cytoplasm ISM GOs from InterProScan
BP GO:0006396 RNA processing ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR008111 RNA-bd_8 PRINTS 47 59
IPR008111 RNA-bd_8 PRINTS 142 158
IPR008111 RNA-bd_8 PRINTS 160 172
IPR008111 RNA-bd_8 PRINTS 86 100
IPR000504 RRM_dom SMART 96 169
IPR008111 RNA-bd_8 PANTHER 1 193
IPR000504 RRM_dom ProSiteProfiles 95 173
IPR012677 Nucleotide-bd_a/b_plait_sf Gene3D 41 187
IPR035979 RBD_domain_sf SUPERFAMILY 90 198
IPR033744 RRM_RBM8 CDD 91 176
IPR000504 RRM_dom Pfam 97 162

No CAZYmes available for this sequence

No external refs found!