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Description : Pentatricopeptide repeat (PPR) superfamily protein
Gene families : OG_01_0014833 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0014833_tree
Sequence : cds (download), rna (download), protein (download)
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.009G116400.4 | |
| Neighborhood | Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.009G116400.4 | |
| Cluster | Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_190 | |
| Cluster | Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_71 |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0005515 | protein binding | ISM | GOs from InterProScan |
| MF | GO:0008270 | zinc ion binding | ISM | GOs from InterProScan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No Predicted GO terms available for this sequence |
| InterPro domains | Description | Source | Start | Stop |
|---|---|---|---|---|
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 212 | 246 |
| IPR032867 | DYW_dom | Pfam | 385 | 509 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 111 | 145 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 1 | 73 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 247 | 282 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 76 | 110 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 181 | 211 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 214 | 247 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 79 | 112 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 187 | 214 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 113 | 147 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 249 | 282 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 211 | 258 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 111 | 158 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 229 | 417 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 287 | 310 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 79 | 108 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 49 | 71 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 74 | 166 |
No CAZYmes available for this sequence
| No external refs found! |