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  5. Sobic.009G118400.1

Sobic.009G118400.1


Description : RNA-binding protein-defense related 1


Gene families : OG_01_0002964 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0002964_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.009G118400.1
Neighborhood Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.009G118400.1
Cluster Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_217
Cluster Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_202


Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding ISM GOs from InterProScan
MF GO:0003723 RNA binding ISM GOs from InterProScan
CC GO:1990904 ribonucleoprotein complex ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR035979 RBD_domain_sf SUPERFAMILY 25 118
IPR000504 RRM_dom SMART 124 200
IPR000504 RRM_dom SMART 36 112
IPR000504 RRM_dom SMART 370 443
IPR000504 RRM_dom ProSiteProfiles 369 447
IPR002343 Hud_Sxl_RNA PRINTS 143 155
IPR002343 Hud_Sxl_RNA PRINTS 128 143
IPR002343 Hud_Sxl_RNA PRINTS 35 50
IPR002343 Hud_Sxl_RNA PRINTS 185 202
IPR000504 RRM_dom ProSiteProfiles 35 116
IPR012677 Nucleotide-bd_a/b_plait_sf Gene3D 332 446
IPR000504 RRM_dom ProSiteProfiles 123 204
IPR035979 RBD_domain_sf SUPERFAMILY 123 450
IPR012677 Nucleotide-bd_a/b_plait_sf Gene3D 22 118
IPR012677 Nucleotide-bd_a/b_plait_sf Gene3D 119 214
IPR000504 RRM_dom Pfam 371 441
IPR000504 RRM_dom Pfam 37 101
IPR000504 RRM_dom Pfam 125 193

No CAZYmes available for this sequence

No external refs found!