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Description : Pentatricopeptide repeat (PPR) superfamily protein
Gene families : OG_01_0015275 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0015275_tree
Sequence : cds (download), rna (download), protein (download)
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.009G127600.2 | |
| Neighborhood | Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.009G127600.2 | |
| Cluster | Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_283 |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0005515 | protein binding | ISM | GOs from InterProScan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No Predicted GO terms available for this sequence |
| InterPro domains | Description | Source | Start | Stop |
|---|---|---|---|---|
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 342 | 376 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 131 | 166 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 272 | 306 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 237 | 271 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 411 | 440 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 202 | 236 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 167 | 201 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 162 | 194 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 266 | 330 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 331 | 402 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 148 | 265 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 403 | 513 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 46 | 147 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 342 | 390 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 204 | 250 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 271 | 320 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 409 | 443 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 240 | 273 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 346 | 377 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 169 | 203 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 274 | 308 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 380 | 401 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 204 | 237 |
No CAZYmes available for this sequence
| No external refs found! |