Sobic.009G132800.3

Description : methyl-CPG-binding domain 1

Gene families : OG_01_0017710 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0017710_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.009G132800.3
Neighborhood	Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.009G132800.3
Cluster	Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_228
Cluster	Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_167

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	ISM	GOs from InterProScan
MF	GO:0005488	binding	None	Extended
MF	GO:0008270	zinc ion binding	ISM	GOs from InterProScan
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR011124	Znf_CW	Pfam	29	72
IPR016177	DNA-bd_dom_sf	SUPERFAMILY	64	170
IPR001739	Methyl_CpG_DNA-bd	ProSiteProfiles	83	154
IPR001739	Methyl_CpG_DNA-bd	SMART	87	159
IPR001739	Methyl_CpG_DNA-bd	Pfam	95	155
IPR011124	Znf_CW	ProSiteProfiles	23	77

No CAZYmes available for this sequence

External Links

No external refs found!