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Description : pentatricopeptide (PPR) repeat-containing protein
Gene families : OG_01_0006197 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0006197_tree
Sequence : cds (download), rna (download), protein (download)
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.009G134400.1 | |
| Neighborhood | Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.009G134400.1 | |
| Cluster | Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_262 | |
| Cluster | Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_71 |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0005515 | protein binding | ISM | GOs from InterProScan |
| MF | GO:0008270 | zinc ion binding | ISM | GOs from InterProScan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No Predicted GO terms available for this sequence |
| InterPro domains | Description | Source | Start | Stop |
|---|---|---|---|---|
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 252 | 376 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 162 | 251 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 40 | 161 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 514 | 645 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 387 | 513 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 443 | 480 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 705 | 731 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 167 | 195 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 289 | 312 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 483 | 511 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 383 | 411 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 74 | 94 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 197 | 226 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 135 | 165 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 349 | 383 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 481 | 515 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 102 | 136 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 164 | 198 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 382 | 415 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 197 | 229 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 483 | 513 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 351 | 377 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 289 | 312 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 107 | 133 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 135 | 165 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 167 | 196 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 599 | 633 |
| IPR032867 | DYW_dom | Pfam | 735 | 859 |
| IPR011990 | TPR-like_helical_dom_sf | SUPERFAMILY | 113 | 483 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 597 | 644 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 348 | 380 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 107 | 130 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 646 | 765 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 287 | 321 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 597 | 631 |
No CAZYmes available for this sequence
| No external refs found! |