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  5. Sobic.009G137600.1

Sobic.009G137600.1


Description : tubulin beta-7 chain


Gene families : OG_01_0000146 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0000146_tree

Sequence : cds (download), rna (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.009G137600.1
Neighborhood Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.009G137600.1
Cluster Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_342
Cluster Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_114


Type GO Term Name Evidence Source
MF GO:0003924 GTPase activity ISM GOs from InterProScan
MF GO:0005200 structural constituent of cytoskeleton ISM GOs from InterProScan
MF GO:0005525 GTP binding ISM GOs from InterProScan
CC GO:0005874 microtubule ISM GOs from InterProScan
BP GO:0007017 microtubule-based process ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR017975 Tubulin_CS ProSitePatterns 128 134
IPR023123 Tubulin_C Gene3D 357 413
IPR037103 Tubulin/FtsZ-like_C Gene3D 239 356
IPR003008 Tubulin_FtsZ_GTPase SMART 37 220
IPR013838 Beta-tubulin_BS ProSitePatterns 1 4
IPR002453 Beta_tubulin PRINTS 312 326
IPR002453 Beta_tubulin PRINTS 330 353
IPR002453 Beta_tubulin PRINTS 140 152
IPR002453 Beta_tubulin PRINTS 395 413
IPR002453 Beta_tubulin PRINTS 360 371
IPR002453 Beta_tubulin PRINTS 294 312
IPR002453 Beta_tubulin PRINTS 30 47
IPR002453 Beta_tubulin PRINTS 96 114
IPR036525 Tubulin/FtsZ_GTPase_sf Gene3D 1 238
IPR000217 Tubulin PRINTS 10 30
IPR000217 Tubulin PRINTS 120 138
IPR000217 Tubulin PRINTS 139 160
IPR000217 Tubulin PRINTS 94 118
IPR000217 Tubulin PRINTS 353 381
IPR003008 Tubulin_FtsZ_GTPase Pfam 3 187
IPR018316 Tubulin/FtsZ_2-layer-sand-dom SMART 222 366
IPR000217 Tubulin PANTHER 1 422
IPR008280 Tub_FtsZ_C SUPERFAMILY 220 412
IPR018316 Tubulin/FtsZ_2-layer-sand-dom Pfam 237 365
IPR036525 Tubulin/FtsZ_GTPase_sf SUPERFAMILY 1 219

No CAZYmes available for this sequence

No external refs found!