Sobic.009G145350.1

Description : tubulin alpha-2 chain

Gene families : OG_01_0000030 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0000030_tree

Sequence : cds (download), rna (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.009G145350.1
Neighborhood	Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.009G145350.1
Cluster	Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_84
Cluster	Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_114

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0003924	GTPase activity	ISM	GOs from InterProScan
MF	GO:0005198	structural molecule activity	None	Extended
MF	GO:0005200	structural constituent of cytoskeleton	ISM	GOs from InterProScan
MF	GO:0005488	binding	None	Extended
MF	GO:0005525	GTP binding	ISM	GOs from InterProScan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005874	microtubule	ISM	GOs from InterProScan
BP	GO:0007017	microtubule-based process	ISM	GOs from InterProScan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009987	cellular process	None	Extended
MF	GO:0016462	pyrophosphatase activity	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	None	Extended
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0017111	ribonucleoside triphosphate phosphatase activity	None	Extended
MF	GO:0019001	guanyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032561	guanyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
CC	GO:0099080	supramolecular complex	None	Extended
CC	GO:0099081	supramolecular polymer	None	Extended
CC	GO:0099512	supramolecular fiber	None	Extended
CC	GO:0099513	polymeric cytoskeletal fiber	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR000217	Tubulin	PANTHER	1	206
IPR003008	Tubulin_FtsZ_GTPase	SMART	45	223
IPR018316	Tubulin/FtsZ_2-layer-sand-dom	Pfam	207	283
IPR018316	Tubulin/FtsZ_2-layer-sand-dom	SMART	172	284
IPR008280	Tub_FtsZ_C	SUPERFAMILY	181	326
IPR003008	Tubulin_FtsZ_GTPase	Pfam	3	189
IPR036525	Tubulin/FtsZ_GTPase_sf	Gene3D	1	206
IPR036525	Tubulin/FtsZ_GTPase_sf	Gene3D	207	273
IPR002452	Alpha_tubulin	PRINTS	116	124
IPR002452	Alpha_tubulin	PRINTS	41	54
IPR002452	Alpha_tubulin	PRINTS	18	33
IPR002452	Alpha_tubulin	PRINTS	84	97
IPR023123	Tubulin_C	Gene3D	275	326
IPR000217	Tubulin	PRINTS	104	128
IPR000217	Tubulin	PRINTS	91	102
IPR000217	Tubulin	PRINTS	10	30
IPR000217	Tubulin	PRINTS	49	68
IPR000217	Tubulin	PANTHER	207	335
IPR036525	Tubulin/FtsZ_GTPase_sf	SUPERFAMILY	1	207

No CAZYmes available for this sequence

External Links

No external refs found!

Sobic.009G145350.1

Expression Profile

Co-expression Networks

Functional Annotation