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  5. Sobic.009G146500.1

Sobic.009G146500.1


Description : beta-galactosidase 16


Gene families : OG_01_0000304 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0000304_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.009G146500.1
Neighborhood Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.009G146500.1
Cluster Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_32
Cluster Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_97


Type GO Term Name Evidence Source
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds ISM GOs from InterProScan
BP GO:0005975 carbohydrate metabolic process ISM GOs from InterProScan
MF GO:0030246 carbohydrate binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR001944 Glycoside_Hdrlase_35 PRINTS 316 331
IPR001944 Glycoside_Hdrlase_35 PRINTS 140 159
IPR001944 Glycoside_Hdrlase_35 PRINTS 669 685
IPR001944 Glycoside_Hdrlase_35 PRINTS 335 351
IPR001944 Glycoside_Hdrlase_35 PRINTS 278 293
IPR001944 Glycoside_Hdrlase_35 PRINTS 64 81
IPR001944 Glycoside_Hdrlase_35 PRINTS 197 212
IPR001944 Glycoside_Hdrlase_35 PRINTS 642 656
IPR001944 Glycoside_Hdrlase_35 PRINTS 85 103
IPR000922 Lectin_gal-bd_dom ProSiteProfiles 750 836
IPR000922 Lectin_gal-bd_dom Pfam 758 835
IPR031330 Gly_Hdrlase_35_cat Pfam 61 367
IPR041392 GHD Pfam 375 445
IPR019801 Glyco_hydro_35_CS ProSitePatterns 199 211
IPR017853 Glycoside_hydrolase_SF SUPERFAMILY 53 369
IPR008979 Galactose-bd-like_sf SUPERFAMILY 429 584
IPR043159 Lectin_gal-bd_sf Gene3D 746 836
IPR025300 BetaGal_jelly_roll_dom Pfam 644 716
IPR008979 Galactose-bd-like_sf SUPERFAMILY 608 748
IPR001944 Glycoside_Hdrlase_35 PANTHER 9 830
HMM Family HMM Length Query Length e-Value Query Start Query End
GH35 307 837 7.5e-107 61 366
No external refs found!