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Description : Tetratricopeptide repeat (TPR)-like superfamily protein
Gene families : OG_01_0010408 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0010408_tree
Sequence : cds (download), rna (download), protein (download)
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.009G147600.1 | |
| Neighborhood | Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.009G147600.1 | |
| Cluster | Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_315 | |
| Cluster | Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_80 |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0005515 | protein binding | ISM | GOs from InterProScan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No Predicted GO terms available for this sequence |
| InterPro domains | Description | Source | Start | Stop |
|---|---|---|---|---|
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 101 | 135 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 101 | 149 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 454 | 501 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 169 | 217 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 63 | 166 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 167 | 276 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 279 | 440 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 205 | 239 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 172 | 206 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 208 | 240 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 457 | 488 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 139 | 166 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 103 | 137 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 450 | 518 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 170 | 204 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 455 | 489 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 391 | 420 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 388 | 422 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 136 | 166 |
No CAZYmes available for this sequence
| No external refs found! |