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  5. Sobic.009G151800.1

Sobic.009G151800.1


Description : polypyrimidine tract-binding protein 3


Gene families : OG_01_0014450 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0014450_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.009G151800.1
Neighborhood Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.009G151800.1
Cluster Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_269
Cluster Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_74


Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding ISM GOs from InterProScan
MF GO:0003723 RNA binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR012677 Nucleotide-bd_a/b_plait_sf Gene3D 101 204
IPR000504 RRM_dom ProSiteProfiles 257 331
IPR000504 RRM_dom ProSiteProfiles 6 80
IPR035979 RBD_domain_sf SUPERFAMILY 256 440
IPR000504 RRM_dom SMART 7 76
IPR000504 RRM_dom SMART 368 437
IPR000504 RRM_dom SMART 258 327
IPR000504 RRM_dom SMART 105 174
IPR012677 Nucleotide-bd_a/b_plait_sf Gene3D 251 349
IPR035979 RBD_domain_sf SUPERFAMILY 100 201
IPR021790 PTBP1-like_RRM2 Pfam 98 178
IPR012677 Nucleotide-bd_a/b_plait_sf Gene3D 1 99
IPR012677 Nucleotide-bd_a/b_plait_sf Gene3D 352 444
IPR000504 RRM_dom Pfam 371 435
IPR000504 RRM_dom ProSiteProfiles 367 441
IPR035979 RBD_domain_sf SUPERFAMILY 3 91

No CAZYmes available for this sequence

No external refs found!