Sobic.009G155400.3

Description : Tetratricopeptide repeat (TPR)-like superfamily protein

Gene families : OG_01_0008700 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0008700_tree

Sequence : cds (download), rna (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.009G155400.3
Neighborhood	Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.009G155400.3
Cluster	Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_127
Cluster	Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_40

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	ISM	GOs from InterProScan
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	ISM	GOs from InterProScan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0008270	zinc ion binding	ISM	GOs from InterProScan
BP	GO:0009451	RNA modification	ISM	GOs from InterProScan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR002885	Pentatricopeptide_rpt	Pfam	646	669
IPR002885	Pentatricopeptide_rpt	Pfam	345	368
IPR002885	Pentatricopeptide_rpt	Pfam	272	296
IPR002885	Pentatricopeptide_rpt	Pfam	242	269
IPR011990	TPR-like_helical_dom_sf	Gene3D	299	422
IPR011990	TPR-like_helical_dom_sf	Gene3D	425	520
IPR032867	DYW_dom	Pfam	745	867
IPR002885	Pentatricopeptide_rpt	ProSiteProfiles	571	605
IPR002885	Pentatricopeptide_rpt	Pfam	468	516
IPR002885	Pentatricopeptide_rpt	Pfam	168	214
IPR002885	Pentatricopeptide_rpt	Pfam	372	417
IPR002885	Pentatricopeptide_rpt	Pfam	571	618
IPR002885	Pentatricopeptide_rpt	ProSiteProfiles	606	641
IPR045215	PPR_prot_At1g15510	PANTHER	269	365
IPR011990	TPR-like_helical_dom_sf	Gene3D	229	298
IPR002885	Pentatricopeptide_rpt	ProSiteProfiles	469	503
IPR045215	PPR_prot_At1g15510	PANTHER	369	866
IPR002885	Pentatricopeptide_rpt	ProSiteProfiles	239	273
IPR002885	Pentatricopeptide_rpt	ProSiteProfiles	169	203
IPR011990	TPR-like_helical_dom_sf	Gene3D	66	228
IPR011990	TPR-like_helical_dom_sf	Gene3D	542	783
IPR002885	Pentatricopeptide_rpt	ProSiteProfiles	372	406
IPR045215	PPR_prot_At1g15510	PANTHER	98	266
IPR002885	Pentatricopeptide_rpt	TIGRFAM	573	606
IPR002885	Pentatricopeptide_rpt	TIGRFAM	374	407
IPR002885	Pentatricopeptide_rpt	TIGRFAM	471	505
IPR002885	Pentatricopeptide_rpt	TIGRFAM	242	271

No CAZYmes available for this sequence

External Links

No external refs found!