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Description : Tetratricopeptide repeat (TPR)-like superfamily protein
Gene families : OG_01_0014188 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0014188_tree
Sequence : cds (download), rna (download), protein (download)
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Setaria viridis coexpression network - v0.2 (X-meeting 2023): Sevir.1G295600.1 | No neighbors in network |
| Neighborhood | Setaria viridis coexpression network - Anderson et al (2021): Sevir.1G295600.1 | |
| Cluster | Setaria viridis HCCA coexpression clusters - Anderson et al (2021): Cluster_49 |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0005515 | protein binding | ISM | GOs from InterProScan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No Predicted GO terms available for this sequence |
| InterPro domains | Description | Source | Start | Stop |
|---|---|---|---|---|
| IPR011990 | TPR-like_helical_dom_sf | SUPERFAMILY | 199 | 628 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 339 | 364 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 542 | 565 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 441 | 461 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 367 | 394 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 365 | 399 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 466 | 500 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 266 | 299 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 503 | 537 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 468 | 501 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 367 | 401 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 440 | 670 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 309 | 439 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 86 | 228 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 501 | 536 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 465 | 513 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 263 | 311 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 162 | 197 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 264 | 298 |
No CAZYmes available for this sequence
| No external refs found! |