Sobic.009G173700.1

Description : expansin A1

Gene families : OG_01_0000144 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0000144_tree

Sequence : cds (download), rna (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.009G173700.1
Neighborhood	Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.009G173700.1
Cluster	Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_156
Cluster	Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_100

Type	GO Term	Name	Evidence	Source
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005576	extracellular region	ISM	GOs from InterProScan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009664	plant-type cell wall organization	ISM	GOs from InterProScan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0045229	external encapsulating structure organization	None	Extended
BP	GO:0071554	cell wall organization or biogenesis	None	Extended
BP	GO:0071555	cell wall organization	None	Extended
BP	GO:0071669	plant-type cell wall organization or biogenesis	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR009009	RlpA-like_DPBB	Pfam	61	145
IPR007117	Expansin_CBD	Pfam	157	234
IPR036749	Expansin_CBD_sf	SUPERFAMILY	153	245
IPR007112	Expansin/allergen_DPBB_dom	SMART	61	146
IPR007117	Expansin_CBD	ProSiteProfiles	166	245
IPR036749	Expansin_CBD_sf	Gene3D	155	248
IPR007112	Expansin/allergen_DPBB_dom	ProSiteProfiles	44	156
IPR036908	RlpA-like_sf	Gene3D	15	151
IPR002963	Expansin	PANTHER	5	248
IPR007118	Expan_Lol_pI	PRINTS	65	83
IPR007118	Expan_Lol_pI	PRINTS	193	207
IPR007118	Expan_Lol_pI	PRINTS	231	245
IPR007118	Expan_Lol_pI	PRINTS	25	40
IPR007118	Expan_Lol_pI	PRINTS	43	61
IPR007118	Expan_Lol_pI	PRINTS	139	155
IPR002963	Expansin	PRINTS	231	247
IPR002963	Expansin	PRINTS	131	144
IPR002963	Expansin	PRINTS	202	223
IPR002963	Expansin	PRINTS	56	70
IPR002963	Expansin	PRINTS	83	94
IPR002963	Expansin	PRINTS	155	167
IPR002963	Expansin	PRINTS	95	105
IPR002963	Expansin	PRINTS	167	188
IPR002963	Expansin	PRINTS	114	131
IPR036908	RlpA-like_sf	SUPERFAMILY	25	174

No CAZYmes available for this sequence

External Links

No external refs found!