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  5. Sobic.009G176300.1

Sobic.009G176300.1


Description : Tetratricopeptide repeat (TPR)-like superfamily protein


Gene families : OG_01_0016212 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0016212_tree

Sequence : cds (download), rna (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.009G176300.1
Neighborhood Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.009G176300.1 No neighbors in network
Cluster Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_4


Type GO Term Name Evidence Source
MF GO:0005515 protein binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR002885 Pentatricopeptide_rpt Pfam 254 301
IPR011990 TPR-like_helical_dom_sf SUPERFAMILY 150 348
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 220 254
IPR002885 Pentatricopeptide_rpt TIGRFAM 257 290
IPR002885 Pentatricopeptide_rpt TIGRFAM 222 256
IPR002885 Pentatricopeptide_rpt TIGRFAM 293 320
IPR011990 TPR-like_helical_dom_sf Gene3D 191 363
IPR011990 TPR-like_helical_dom_sf Gene3D 40 190
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 290 324
IPR002885 Pentatricopeptide_rpt Pfam 222 251
IPR002885 Pentatricopeptide_rpt Pfam 327 353
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 255 289

No CAZYmes available for this sequence

No external refs found!