Sobic.009G177600.1

Description : breast cancer associated RING 1

Gene families : OG_01_0007292 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0007292_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.009G177600.1
Neighborhood	Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.009G177600.1
Cluster	Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_44
Cluster	Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_106

Type	GO Term	Name	Evidence	Source
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006281	DNA repair	ISM	GOs from InterProScan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006974	DNA damage response	ISM	GOs from InterProScan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0033554	cellular response to stress	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051716	cellular response to stimulus	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR031099	BRCA1-associated	PANTHER	397	683
IPR031099	BRCA1-associated	PANTHER	334	391
IPR034732	EPHD	ProSiteProfiles	101	211
IPR036420	BRCT_dom_sf	Gene3D	570	675
IPR001357	BRCT_dom	Pfam	470	533
IPR036420	BRCT_dom_sf	SUPERFAMILY	461	551
IPR036420	BRCT_dom_sf	Gene3D	459	564
IPR001357	BRCT_dom	ProSiteProfiles	457	546
IPR031099	BRCA1-associated	PANTHER	12	327
IPR001357	BRCT_dom	SMART	453	536
IPR001965	Znf_PHD	SMART	163	211
IPR013083	Znf_RING/FYVE/PHD	Gene3D	89	213

No CAZYmes available for this sequence

External Links

No external refs found!