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  5. Sobic.009G201200.1

Sobic.009G201200.1


Description : periodic tryptophan protein 2


Gene families : OG_01_0005355 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0005355_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.009G201200.1
Neighborhood Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.009G201200.1
Cluster Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_195
Cluster Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_40


Type GO Term Name Evidence Source
MF GO:0005515 protein binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR001680 WD40_rpt ProSiteProfiles 410 451
IPR011047 Quinoprotein_ADH-like_supfam SUPERFAMILY 20 349
IPR001680 WD40_rpt Pfam 134 167
IPR001680 WD40_rpt Pfam 406 442
IPR001680 WD40_rpt Pfam 491 528
IPR001680 WD40_rpt Pfam 541 570
IPR001680 WD40_rpt Pfam 369 399
IPR001680 WD40_rpt ProSiteProfiles 496 529
IPR011047 Quinoprotein_ADH-like_supfam SUPERFAMILY 206 650
IPR015943 WD40/YVTN_repeat-like_dom_sf Gene3D 35 257
IPR001680 WD40_rpt SMART 131 170
IPR001680 WD40_rpt SMART 593 632
IPR001680 WD40_rpt SMART 175 219
IPR001680 WD40_rpt SMART 701 732
IPR001680 WD40_rpt SMART 361 400
IPR001680 WD40_rpt SMART 84 121
IPR001680 WD40_rpt SMART 532 570
IPR001680 WD40_rpt SMART 43 81
IPR001680 WD40_rpt SMART 276 315
IPR001680 WD40_rpt SMART 489 528
IPR001680 WD40_rpt SMART 403 442
IPR001680 WD40_rpt SMART 318 358
IPR019775 WD40_repeat_CS ProSitePatterns 429 443
IPR020472 G-protein_beta_WD-40_rep PRINTS 429 443
IPR020472 G-protein_beta_WD-40_rep PRINTS 515 529
IPR020472 G-protein_beta_WD-40_rep PRINTS 387 401
IPR027145 PWP2 PANTHER 1 879
IPR007148 SSU_processome_Utp12 Pfam 773 878
IPR001680 WD40_rpt ProSiteProfiles 368 409
IPR001680 WD40_rpt ProSiteProfiles 538 579
IPR019775 WD40_repeat_CS ProSitePatterns 515 529
IPR015943 WD40/YVTN_repeat-like_dom_sf Gene3D 479 664
IPR015943 WD40/YVTN_repeat-like_dom_sf Gene3D 281 478

No CAZYmes available for this sequence

No external refs found!