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  5. Sobic.009G246950.1

Sobic.009G246950.1


Description : RNA-binding (RRM/RBD/RNP motifs) family protein


Gene families : OG_01_0001307 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0001307_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.009G246950.1
Neighborhood Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.009G246950.1
Cluster Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_150
Cluster Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_164


Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding ISM GOs from InterProScan
MF GO:0003723 RNA binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR035979 RBD_domain_sf SUPERFAMILY 89 263
IPR035979 RBD_domain_sf SUPERFAMILY 522 610
IPR012677 Nucleotide-bd_a/b_plait_sf Gene3D 402 496
IPR012677 Nucleotide-bd_a/b_plait_sf Gene3D 81 173
IPR012677 Nucleotide-bd_a/b_plait_sf Gene3D 512 615
IPR012677 Nucleotide-bd_a/b_plait_sf Gene3D 190 279
IPR000504 RRM_dom Pfam 531 596
IPR000504 RRM_dom Pfam 89 153
IPR000504 RRM_dom Pfam 412 474
IPR000504 RRM_dom Pfam 207 262
IPR035979 RBD_domain_sf SUPERFAMILY 402 486
IPR000504 RRM_dom SMART 410 479
IPR000504 RRM_dom SMART 528 600
IPR000504 RRM_dom SMART 205 277
IPR000504 RRM_dom SMART 87 156
IPR000504 RRM_dom ProSiteProfiles 204 262
IPR000504 RRM_dom ProSiteProfiles 527 604

No CAZYmes available for this sequence

No external refs found!