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  5. Sobic.009G253600.1

Sobic.009G253600.1


Description : Pentatricopeptide repeat (PPR) superfamily protein


Gene families : OG_01_0000170 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0000170_tree

Sequence : cds (download), rna (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.009G253600.1
Neighborhood Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.009G253600.1 No neighbors in network
Cluster Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_307


Type GO Term Name Evidence Source
MF GO:0005515 protein binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR002885 Pentatricopeptide_rpt Pfam 57 88
IPR002885 Pentatricopeptide_rpt Pfam 4 34
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 149 183
IPR002885 Pentatricopeptide_rpt Pfam 115 161
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 114 148
IPR002885 Pentatricopeptide_rpt TIGRFAM 63 91
IPR002885 Pentatricopeptide_rpt TIGRFAM 186 219
IPR002885 Pentatricopeptide_rpt TIGRFAM 117 146
IPR002885 Pentatricopeptide_rpt TIGRFAM 152 185
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 184 218
IPR002885 Pentatricopeptide_rpt Pfam 186 216
IPR011990 TPR-like_helical_dom_sf Gene3D 1 92
IPR011990 TPR-like_helical_dom_sf Gene3D 93 283
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 61 95

No CAZYmes available for this sequence

No external refs found!