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  5. Sobic.009G260500.1

Sobic.009G260500.1


Description : Tetratricopeptide repeat (TPR)-like superfamily protein


Gene families : OG_01_0001467 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0001467_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.009G260500.1
Neighborhood Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.009G260500.1
Cluster Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_291
Cluster Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_72


Type GO Term Name Evidence Source
MF GO:0005515 protein binding ISM GOs from InterProScan
CC GO:0005634 nucleus ISM GOs from InterProScan
BP GO:0006396 RNA processing ISM GOs from InterProScan
BP GO:0031124 mRNA 3'-end processing ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR011990 TPR-like_helical_dom_sf SUPERFAMILY 19 526
IPR045243 Rna14-like PANTHER 17 713
IPR003107 HAT SMART 328 361
IPR003107 HAT SMART 260 292
IPR003107 HAT SMART 363 395
IPR003107 HAT SMART 432 466
IPR003107 HAT SMART 34 66
IPR003107 HAT SMART 398 430
IPR003107 HAT SMART 107 142
IPR003107 HAT SMART 153 186
IPR003107 HAT SMART 68 99
IPR003107 HAT SMART 294 326
IPR008847 Suf Pfam 349 641
IPR019734 TPR_repeat ProSiteProfiles 280 313

No CAZYmes available for this sequence

No external refs found!