Sobic.010G006200.1

Description : expansin A18

Gene families : OG_01_0055095 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0055095_tree

Sequence : cds (download), rna (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.010G006200.1
Neighborhood	Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.010G006200.1
Cluster	Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_121
Cluster	Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_12

Type	GO Term	Name	Evidence	Source
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005576	extracellular region	ISM	GOs from InterProScan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009664	plant-type cell wall organization	ISM	GOs from InterProScan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0045229	external encapsulating structure organization	None	Extended
BP	GO:0071554	cell wall organization or biogenesis	None	Extended
BP	GO:0071555	cell wall organization	None	Extended
BP	GO:0071669	plant-type cell wall organization or biogenesis	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR036908	RlpA-like_sf	SUPERFAMILY	42	194
IPR036749	Expansin_CBD_sf	SUPERFAMILY	173	271
IPR007117	Expansin_CBD	ProSiteProfiles	186	271
IPR002963	Expansin	PANTHER	5	276
IPR007112	Expansin/allergen_DPBB_dom	SMART	80	166
IPR007117	Expansin_CBD	Pfam	177	259
IPR002963	Expansin	PRINTS	115	125
IPR002963	Expansin	PRINTS	134	151
IPR002963	Expansin	PRINTS	187	208
IPR002963	Expansin	PRINTS	175	187
IPR002963	Expansin	PRINTS	75	89
IPR002963	Expansin	PRINTS	101	112
IPR002963	Expansin	PRINTS	151	164
IPR036749	Expansin_CBD_sf	Gene3D	176	276
IPR007118	Expan_Lol_pI	PRINTS	216	230
IPR007118	Expan_Lol_pI	PRINTS	84	102
IPR007118	Expan_Lol_pI	PRINTS	257	271
IPR007118	Expan_Lol_pI	PRINTS	61	79
IPR007118	Expan_Lol_pI	PRINTS	42	57
IPR007118	Expan_Lol_pI	PRINTS	159	175
IPR036908	RlpA-like_sf	Gene3D	29	172
IPR009009	RlpA-like_DPBB	Pfam	80	166
IPR007112	Expansin/allergen_DPBB_dom	ProSiteProfiles	62	176

No CAZYmes available for this sequence

External Links

No external refs found!