Sobic.010G038200.1

Description : homolog of yeast CDT1 A

Gene families : OG_01_0010747 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0010747_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.010G038200.1
Neighborhood	Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.010G038200.1
Cluster	Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_318
Cluster	Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_78

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	ISM	GOs from InterProScan
MF	GO:0005488	binding	None	Extended
BP	GO:0006275	regulation of DNA replication	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0022402	cell cycle process	None	Extended
BP	GO:0022607	cellular component assembly	None	Extended
BP	GO:0030174	regulation of DNA-templated DNA replication initiation	ISM	GOs from InterProScan
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0043933	protein-containing complex organization	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051052	regulation of DNA metabolic process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065003	protein-containing complex assembly	None	Extended
BP	GO:0065004	protein-DNA complex assembly	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0071163	DNA replication preinitiation complex assembly	ISM	GOs from InterProScan
BP	GO:0071824	protein-DNA complex organization	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
BP	GO:0090329	regulation of DNA-templated DNA replication	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR014939	CDT1_Gemini-bd-like	CDD	121	286
IPR045173	Cdt1	PANTHER	21	574
IPR014939	CDT1_Gemini-bd-like	SMART	128	260
IPR036390	WH_DNA-bd_sf	SUPERFAMILY	124	262
IPR032054	Cdt1_C	CDD	445	571
IPR014939	CDT1_Gemini-bd-like	Pfam	128	192
IPR038090	Cdt1_C_WH_dom_sf	Gene3D	444	575
IPR032054	Cdt1_C	Pfam	454	548

No CAZYmes available for this sequence

External Links

No external refs found!

Sobic.010G038200.1

Expression Profile

Co-expression Networks

Functional Annotation