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  5. Sobic.010G040400.1

Sobic.010G040400.1


Description : Pectin lyase-like superfamily protein


Gene families : OG_01_0037240 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0037240_tree

Sequence : cds (download), rna (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.010G040400.1
Neighborhood Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.010G040400.1
Cluster Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_1
Cluster Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_38


Type GO Term Name Evidence Source
MF GO:0004650 polygalacturonase activity ISM GOs from InterProScan
BP GO:0005975 carbohydrate metabolic process ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR012334 Pectin_lyas_fold Gene3D 20 392
IPR006626 PbH1 SMART 180 206
IPR006626 PbH1 SMART 260 281
IPR006626 PbH1 SMART 207 228
IPR006626 PbH1 SMART 325 352
IPR000743 Glyco_hydro_28 Pfam 58 384
IPR000743 Glyco_hydro_28 ProSitePatterns 237 250
IPR011050 Pectin_lyase_fold/virulence SUPERFAMILY 14 395
HMM Family HMM Length Query Length e-Value Query Start Query End
GH28 325 396 3.9e-84 55 384
No external refs found!