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Description : Pentatricopeptide repeat (PPR) superfamily protein
Gene families : OG_01_0018549 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0018549_tree
Sequence : cds (download), rna (download), protein (download)
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.010G085900.1 | |
| Neighborhood | Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.010G085900.1 | No neighbors in network |
| Cluster | Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_250 |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0005515 | protein binding | ISM | GOs from InterProScan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No Predicted GO terms available for this sequence |
| InterPro domains | Description | Source | Start | Stop |
|---|---|---|---|---|
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 328 | 362 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 224 | 258 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 297 | 329 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 262 | 294 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 330 | 363 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 401 | 432 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 365 | 398 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 187 | 214 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 293 | 327 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 363 | 397 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 327 | 376 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 257 | 306 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 183 | 235 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 184 | 218 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 258 | 292 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 394 | 425 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 222 | 256 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 253 | 321 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 391 | 459 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 322 | 390 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 118 | 252 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 398 | 432 |
No CAZYmes available for this sequence
| No external refs found! |