Sobic.010G112100.1

Description : Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein

Gene families : OG_01_0005334 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0005334_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.010G112100.1
Neighborhood	Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.010G112100.1
Cluster	Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_105
Cluster	Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_116

Type	GO Term	Name	Evidence	Source
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISM	GOs from InterProScan
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR003889	FYrich_C	SMART	1095	1188
IPR003347	JmjC_dom	Pfam	384	500
IPR003888	FYrich_N	SMART	1045	1089
IPR003889	FYrich_C	Pfam	1093	1182
IPR003347	JmjC_dom	ProSiteProfiles	351	517
IPR003888	FYrich_N	Pfam	1043	1086
IPR003888	FYrich_N	ProSiteProfiles	1031	1089
IPR004198	Znf_C5HC2	Pfam	606	656
IPR003889	FYrich_C	ProSiteProfiles	1091	1181
IPR003347	JmjC_dom	SMART	351	517
IPR003349	JmjN	Pfam	160	193
IPR003349	JmjN	ProSiteProfiles	159	200
IPR003349	JmjN	SMART	158	199

No CAZYmes available for this sequence

External Links

No external refs found!