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Description : Pentatricopeptide repeat (PPR) superfamily protein
Gene families : OG_01_0011012 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0011012_tree
Sequence : cds (download), rna (download), protein (download)
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.010G134600.1 | |
| Neighborhood | Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.010G134600.1 | |
| Cluster | Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_340 | |
| Cluster | Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_32 |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0005515 | protein binding | ISM | GOs from InterProScan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No Predicted GO terms available for this sequence |
| InterPro domains | Description | Source | Start | Stop |
|---|---|---|---|---|
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 347 | 381 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 380 | 408 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 412 | 447 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 321 | 347 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 350 | 379 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 514 | 547 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 410 | 457 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 546 | 580 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 176 | 275 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 511 | 545 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 464 | 558 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 284 | 377 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 559 | 694 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 378 | 463 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 410 | 440 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 81 | 110 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 514 | 541 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 350 | 378 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 650 | 677 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 549 | 578 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 380 | 408 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 319 | 345 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 585 | 608 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 79 | 113 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 67 | 175 |
No CAZYmes available for this sequence
| No external refs found! |