Sevir.9G071200.1

Description : pentatricopeptide (PPR) repeat-containing protein

Gene families : OG_01_0012847 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0012847_tree

Sequence : cds (download), rna (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Setaria viridis coexpression network - v0.2 (X-meeting 2023): Sevir.9G071200.1
Neighborhood	Setaria viridis coexpression network - Anderson et al (2021): Sevir.9G071200.1
Cluster	Setaria viridis HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_118
Cluster	Setaria viridis HCCA coexpression clusters - Anderson et al (2021): Cluster_78

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	ISM	GOs from InterProScan
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	ISM	GOs from InterProScan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0008270	zinc ion binding	ISM	GOs from InterProScan
BP	GO:0009451	RNA modification	ISM	GOs from InterProScan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR002885	Pentatricopeptide_rpt	ProSiteProfiles	228	262
IPR002885	Pentatricopeptide_rpt	TIGRFAM	498	531
IPR002885	Pentatricopeptide_rpt	TIGRFAM	98	127
IPR002885	Pentatricopeptide_rpt	TIGRFAM	397	429
IPR002885	Pentatricopeptide_rpt	TIGRFAM	261	295
IPR002885	Pentatricopeptide_rpt	TIGRFAM	533	566
IPR002885	Pentatricopeptide_rpt	TIGRFAM	365	394
IPR002885	Pentatricopeptide_rpt	TIGRFAM	231	261
IPR011990	TPR-like_helical_dom_sf	SUPERFAMILY	374	657
IPR002885	Pentatricopeptide_rpt	Pfam	570	594
IPR002885	Pentatricopeptide_rpt	Pfam	98	126
IPR002885	Pentatricopeptide_rpt	Pfam	469	493
IPR002885	Pentatricopeptide_rpt	Pfam	202	227
IPR002885	Pentatricopeptide_rpt	Pfam	129	159
IPR002885	Pentatricopeptide_rpt	ProSiteProfiles	496	530
IPR002885	Pentatricopeptide_rpt	Pfam	362	391
IPR002885	Pentatricopeptide_rpt	Pfam	393	441
IPR002885	Pentatricopeptide_rpt	Pfam	496	542
IPR002885	Pentatricopeptide_rpt	Pfam	259	308
IPR011990	TPR-like_helical_dom_sf	Gene3D	180	321
IPR011990	TPR-like_helical_dom_sf	Gene3D	77	179
IPR032867	DYW_dom	Pfam	670	793
IPR011990	TPR-like_helical_dom_sf	Gene3D	322	467
IPR011990	TPR-like_helical_dom_sf	Gene3D	468	774
IPR002885	Pentatricopeptide_rpt	ProSiteProfiles	363	393
IPR002885	Pentatricopeptide_rpt	ProSiteProfiles	394	428
IPR002885	Pentatricopeptide_rpt	ProSiteProfiles	96	130
IPR045215	PPR_prot_At1g15510	PANTHER	40	794

No CAZYmes available for this sequence

External Links

No external refs found!