1. Home
  2. Species
  3. Sorghum bicolor
  4. Sequence
  5. Sobic.010G152900.1

Sobic.010G152900.1


Description : beta-D-xylosidase 4


Gene families : OG_01_0014347 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0014347_tree

Sequence : cds (download), rna (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.010G152900.1
Neighborhood Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.010G152900.1
Cluster Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_167
Cluster Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_182


Type GO Term Name Evidence Source
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds ISM GOs from InterProScan
BP GO:0005975 carbohydrate metabolic process ISM GOs from InterProScan
MF GO:0009044 xylan 1,4-beta-xylosidase activity ISM GOs from InterProScan
BP GO:0045493 xylan catabolic process ISM GOs from InterProScan
Toggle parental
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR036881 Glyco_hydro_3_C_sf SUPERFAMILY 447 659
IPR026891 Fn3-like Pfam 724 792
IPR036881 Glyco_hydro_3_C_sf Gene3D 432 657
IPR017853 Glycoside_hydrolase_SF SUPERFAMILY 61 446
IPR026891 Fn3-like SMART 724 796
IPR001764 Glyco_hydro_3_N Pfam 136 404
IPR044993 BXL PANTHER 8 809
IPR013783 Ig-like_fold Gene3D 697 805
IPR036962 Glyco_hydro_3_N_sf Gene3D 66 428
IPR002772 Glyco_hydro_3_C Pfam 447 656
HMM Family HMM Length Query Length e-Value Query Start Query End
GH3 216 810 1.4e-65 96 365
No external refs found!