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  5. Sobic.010G153600.1

Sobic.010G153600.1


Description : Tetratricopeptide repeat (TPR)-like superfamily protein


Gene families : OG_01_0010643 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0010643_tree

Sequence : cds (download), rna (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.010G153600.1
Neighborhood Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.010G153600.1
Cluster Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_205
Cluster Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_230


Type GO Term Name Evidence Source
MF GO:0005515 protein binding ISM GOs from InterProScan
MF GO:0008270 zinc ion binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR011990 TPR-like_helical_dom_sf Gene3D 482 589
IPR011990 TPR-like_helical_dom_sf Gene3D 394 481
IPR011990 TPR-like_helical_dom_sf Gene3D 590 867
IPR011990 TPR-like_helical_dom_sf Gene3D 21 190
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 124 158
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 558 592
IPR002885 Pentatricopeptide_rpt Pfam 200 222
IPR002885 Pentatricopeptide_rpt Pfam 413 432
IPR002885 Pentatricopeptide_rpt Pfam 341 365
IPR002885 Pentatricopeptide_rpt Pfam 98 123
IPR002885 Pentatricopeptide_rpt Pfam 126 155
IPR002885 Pentatricopeptide_rpt Pfam 438 477
IPR002885 Pentatricopeptide_rpt Pfam 557 604
IPR002885 Pentatricopeptide_rpt Pfam 234 279
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 594 629
IPR002885 Pentatricopeptide_rpt TIGRFAM 341 373
IPR002885 Pentatricopeptide_rpt TIGRFAM 441 470
IPR002885 Pentatricopeptide_rpt TIGRFAM 560 589
IPR002885 Pentatricopeptide_rpt TIGRFAM 235 268
IPR002885 Pentatricopeptide_rpt TIGRFAM 596 630
IPR032867 DYW_dom Pfam 733 856
IPR011990 TPR-like_helical_dom_sf Gene3D 196 282
IPR011990 TPR-like_helical_dom_sf Gene3D 283 393
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 439 473
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 233 267
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 337 372

No CAZYmes available for this sequence

No external refs found!