Sobic.010G162700.1

Description : FAD-binding Berberine family protein

Gene families : OG_01_0000505 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0000505_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.010G162700.1
Neighborhood	Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.010G162700.1
Cluster	Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_1
Cluster	Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_135

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0016491	oxidoreductase activity	ISM	GOs from InterProScan
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0050660	flavin adenine dinucleotide binding	ISM	GOs from InterProScan
MF	GO:0071949	FAD binding	ISM	GOs from InterProScan
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR016167	FAD-bd_PCMH_sub1	Gene3D	30	139
IPR012951	BBE	Pfam	463	522
IPR016169	FAD-bd_PCMH_sub2	Gene3D	144	523
IPR006094	Oxid_FAD_bind_N	Pfam	83	221
IPR036318	FAD-bd_PCMH-like_sf	SUPERFAMILY	38	256
IPR016166	FAD-bd_PCMH	ProSiteProfiles	79	255

HMM Family	HMM Length	Query Length	e-Value	Query Start	Query End
AA7	458	527	3.8e-92	79	521

External Links

No external refs found!