Sobic.010G176400.1

Description : Pectate lyase family protein

Gene families : OG_01_0005765 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0005765_tree

Sequence : cds (download), rna (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.010G176400.1
Neighborhood	Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.010G176400.1
Cluster	Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_5
Cluster	Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_8

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0016829	lyase activity	None	Extended
MF	GO:0016835	carbon-oxygen lyase activity	None	Extended
MF	GO:0016837	carbon-oxygen lyase activity, acting on polysaccharides	None	Extended
MF	GO:0030570	pectate lyase activity	ISM	GOs from InterProScan

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR007524	Pec_lyase_N	Pfam	32	83
IPR045032	PEL	PANTHER	9	454
IPR011050	Pectin_lyase_fold/virulence	SUPERFAMILY	103	445
IPR012334	Pectin_lyas_fold	Gene3D	102	447
IPR002022	Pec_lyase	SMART	177	376
IPR002022	Pec_lyase	Pfam	184	369
IPR018082	AmbAllergen	PRINTS	353	372
IPR018082	AmbAllergen	PRINTS	425	448
IPR018082	AmbAllergen	PRINTS	149	174
IPR018082	AmbAllergen	PRINTS	251	272
IPR018082	AmbAllergen	PRINTS	125	142
IPR018082	AmbAllergen	PRINTS	185	201
IPR018082	AmbAllergen	PRINTS	331	350
IPR018082	AmbAllergen	PRINTS	395	419

No CAZYmes available for this sequence

External Links

No external refs found!