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  5. Sobic.010G177500.1

Sobic.010G177500.1


Description : syntaxin of plants 124


Gene families : OG_01_0004960 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0004960_tree

Sequence : cds (download), rna (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.010G177500.1
Neighborhood Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.010G177500.1
Cluster Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_19
Cluster Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_243


Type GO Term Name Evidence Source
MF GO:0005484 SNAP receptor activity ISM GOs from InterProScan
BP GO:0006886 intracellular protein transport ISM GOs from InterProScan
CC GO:0016020 membrane ISM GOs from InterProScan
BP GO:0016192 vesicle-mediated transport ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR000727 T_SNARE_dom SMART 200 267
IPR000727 T_SNARE_dom Pfam 242 293
IPR006011 Syntaxin_N SMART 30 156
IPR010989 SNARE SUPERFAMILY 34 260
IPR000727 T_SNARE_dom ProSiteProfiles 205 267
IPR006012 Syntaxin/epimorphin_CS ProSitePatterns 211 250
IPR006011 Syntaxin_N CDD 35 192
IPR006011 Syntaxin_N Pfam 37 240
IPR045242 Syntaxin PANTHER 22 295

No CAZYmes available for this sequence

No external refs found!