Sobic.010G178600.1

Description : Coatomer, beta\' subunit

Gene families : OG_01_0000074 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0000074_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.010G178600.1
Neighborhood	Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.010G178600.1
Cluster	Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_185
Cluster	Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_195

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005198	structural molecule activity	ISM	GOs from InterProScan
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	ISM	GOs from InterProScan
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006810	transport	None	Extended
BP	GO:0006886	intracellular protein transport	ISM	GOs from InterProScan
BP	GO:0008104	protein localization	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0015031	protein transport	None	Extended
BP	GO:0016192	vesicle-mediated transport	ISM	GOs from InterProScan
CC	GO:0030117	membrane coat	ISM	GOs from InterProScan
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0033036	macromolecule localization	None	Extended
BP	GO:0045184	establishment of protein localization	None	Extended
BP	GO:0046907	intracellular transport	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0051641	cellular localization	None	Extended
BP	GO:0051649	establishment of localization in cell	None	Extended
BP	GO:0070727	cellular macromolecule localization	None	Extended
BP	GO:0071702	organic substance transport	None	Extended
BP	GO:0071705	nitrogen compound transport	None	Extended
CC	GO:0098796	membrane protein complex	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR001680	WD40_rpt	ProSiteProfiles	225	266
IPR020472	G-protein_beta_WD-40_rep	PRINTS	244	258
IPR020472	G-protein_beta_WD-40_rep	PRINTS	158	172
IPR020472	G-protein_beta_WD-40_rep	PRINTS	202	216
IPR001680	WD40_rpt	SMART	174	215
IPR001680	WD40_rpt	SMART	46	85
IPR001680	WD40_rpt	SMART	4	43
IPR001680	WD40_rpt	SMART	218	257
IPR001680	WD40_rpt	SMART	131	171
IPR001680	WD40_rpt	SMART	88	127
IPR016453	COPB2	PIRSF	2	882
IPR001680	WD40_rpt	Pfam	92	127
IPR001680	WD40_rpt	Pfam	177	215
IPR001680	WD40_rpt	Pfam	220	256
IPR001680	WD40_rpt	Pfam	133	171
IPR036322	WD40_repeat_dom_sf	SUPERFAMILY	3	297
IPR015943	WD40/YVTN_repeat-like_dom_sf	Gene3D	11	300
IPR001680	WD40_rpt	ProSiteProfiles	95	127
IPR001680	WD40_rpt	ProSiteProfiles	138	180
IPR001680	WD40_rpt	ProSiteProfiles	11	52
IPR006692	Coatomer_WD-assoc_reg	Pfam	319	763
IPR001680	WD40_rpt	ProSiteProfiles	181	224

No CAZYmes available for this sequence

External Links

No external refs found!