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  5. Sobic.010G189200.1

Sobic.010G189200.1


Description : Pentatricopeptide repeat (PPR-like) superfamily protein


Gene families : OG_01_0011628 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0011628_tree

Sequence : cds (download), rna (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.010G189200.1
Neighborhood Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.010G189200.1
Cluster Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_301
Cluster Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_517


Type GO Term Name Evidence Source
MF GO:0005515 protein binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR002885 Pentatricopeptide_rpt Pfam 412 458
IPR011990 TPR-like_helical_dom_sf SUPERFAMILY 207 573
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 313 343
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 412 446
IPR002885 Pentatricopeptide_rpt TIGRFAM 315 342
IPR002885 Pentatricopeptide_rpt TIGRFAM 414 447
IPR002885 Pentatricopeptide_rpt TIGRFAM 213 241
IPR011990 TPR-like_helical_dom_sf Gene3D 138 270
IPR011990 TPR-like_helical_dom_sf Gene3D 343 452
IPR011990 TPR-like_helical_dom_sf Gene3D 271 342
IPR011990 TPR-like_helical_dom_sf Gene3D 453 556
IPR002885 Pentatricopeptide_rpt Pfam 290 312
IPR002885 Pentatricopeptide_rpt Pfam 183 208
IPR002885 Pentatricopeptide_rpt Pfam 315 340
IPR002885 Pentatricopeptide_rpt Pfam 214 239

No CAZYmes available for this sequence

No external refs found!