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  5. Sobic.010G190900.1

Sobic.010G190900.1


Description : Pentatricopeptide repeat (PPR) superfamily protein


Gene families : OG_01_0013677 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0013677_tree

Sequence : cds (download), rna (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.010G190900.1
Neighborhood Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.010G190900.1 No neighbors in network
Cluster Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_58


Type GO Term Name Evidence Source
MF GO:0005515 protein binding ISM GOs from InterProScan
MF GO:0008270 zinc ion binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR002885 Pentatricopeptide_rpt Pfam 338 365
IPR002885 Pentatricopeptide_rpt Pfam 276 302
IPR002885 Pentatricopeptide_rpt Pfam 304 331
IPR002885 Pentatricopeptide_rpt Pfam 175 199
IPR002885 Pentatricopeptide_rpt Pfam 375 399
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 201 235
IPR011990 TPR-like_helical_dom_sf Gene3D 248 514
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 302 332
IPR011990 TPR-like_helical_dom_sf Gene3D 30 162
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 100 134
IPR002885 Pentatricopeptide_rpt TIGRFAM 203 236
IPR002885 Pentatricopeptide_rpt TIGRFAM 304 331
IPR002885 Pentatricopeptide_rpt TIGRFAM 102 136
IPR002885 Pentatricopeptide_rpt Pfam 200 247
IPR002885 Pentatricopeptide_rpt Pfam 99 146
IPR032867 DYW_dom Pfam 474 596

No CAZYmes available for this sequence

No external refs found!