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  5. Sobic.010G213200.1

Sobic.010G213200.1


Description : Transducin/WD40 repeat-like superfamily protein


Gene families : OG_01_0013439 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0013439_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.010G213200.1
Neighborhood Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.010G213200.1
Cluster Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_137
Cluster Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_161


Type GO Term Name Evidence Source
MF GO:0005515 protein binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR001680 WD40_rpt ProSiteProfiles 134 176
IPR001680 WD40_rpt Pfam 306 340
IPR001680 WD40_rpt Pfam 218 250
IPR001680 WD40_rpt Pfam 259 300
IPR001680 WD40_rpt Pfam 46 80
IPR001680 WD40_rpt Pfam 87 124
IPR001680 WD40_rpt Pfam 129 167
IPR019775 WD40_repeat_CS ProSitePatterns 287 301
IPR001680 WD40_rpt ProSiteProfiles 279 309
IPR015943 WD40/YVTN_repeat-like_dom_sf Gene3D 41 343
IPR036322 WD40_repeat_dom_sf SUPERFAMILY 46 340
IPR001680 WD40_rpt ProSiteProfiles 49 80
IPR001680 WD40_rpt ProSiteProfiles 218 252
IPR019775 WD40_repeat_CS ProSitePatterns 154 168
IPR001680 WD40_rpt ProSiteProfiles 310 343
IPR001680 WD40_rpt ProSiteProfiles 183 217
IPR001680 WD40_rpt SMART 127 167
IPR001680 WD40_rpt SMART 85 124
IPR001680 WD40_rpt SMART 303 342
IPR001680 WD40_rpt SMART 211 250
IPR001680 WD40_rpt SMART 170 208
IPR001680 WD40_rpt SMART 257 300
IPR001680 WD40_rpt SMART 42 81
IPR001680 WD40_rpt ProSiteProfiles 92 133
IPR019775 WD40_repeat_CS ProSitePatterns 111 125
IPR020472 G-protein_beta_WD-40_rep PRINTS 111 125
IPR020472 G-protein_beta_WD-40_rep PRINTS 154 168
IPR020472 G-protein_beta_WD-40_rep PRINTS 237 251

No CAZYmes available for this sequence

No external refs found!