Sobic.010G228500.1

Description : RAB geranylgeranyl transferase alpha subunit 1

Gene families : OG_01_0001984 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0001984_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.010G228500.1
Neighborhood	Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.010G228500.1
Cluster	Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_106
Cluster	Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_152

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004659	prenyltransferase activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	ISM	GOs from InterProScan
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0008318	protein prenyltransferase activity	ISM	GOs from InterProScan
BP	GO:0009987	cellular process	None	Extended
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016765	transferase activity, transferring alkyl or aryl (other than methyl) groups	None	Extended
BP	GO:0018342	protein prenylation	ISM	GOs from InterProScan
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0036211	protein modification process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0097354	prenylation	None	Extended
MF	GO:0140096	catalytic activity, acting on a protein	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR001611	Leu-rich_rpt	ProSiteProfiles	570	591
IPR002088	Prenyl_trans_a	Pfam	124	152
IPR002088	Prenyl_trans_a	Pfam	87	116
IPR002088	Prenyl_trans_a	Pfam	43	71
IPR002088	Prenyl_trans_a	Pfam	159	188
IPR002088	Prenyl_trans_a	Pfam	205	234
IPR002088	Prenyl_trans_a	ProSiteProfiles	157	191
IPR001611	Leu-rich_rpt	ProSiteProfiles	548	569
IPR002088	Prenyl_trans_a	ProSiteProfiles	85	119
IPR002088	Prenyl_trans_a	ProSiteProfiles	40	74
IPR025875	Leu-rich_rpt_4	Pfam	550	588
IPR002088	Prenyl_trans_a	ProSiteProfiles	203	237
IPR032675	LRR_dom_sf	Gene3D	496	693
IPR002088	Prenyl_trans_a	ProSiteProfiles	122	156

No CAZYmes available for this sequence

External Links

No external refs found!