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  5. Sobic.010G229801.1

Sobic.010G229801.1


Description : binding


Gene families : OG_01_0000390 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0000390_tree

Sequence : cds (download), rna (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.010G229801.1
Neighborhood Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.010G229801.1
Cluster Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_52
Cluster Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_38


Type GO Term Name Evidence Source
MF GO:0005515 protein binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR023362 PH-BEACH_dom ProSiteProfiles 2358 2504
IPR016024 ARM-type_fold SUPERFAMILY 915 1745
IPR013320 ConA-like_dom_sf SUPERFAMILY 1058 1246
IPR001680 WD40_rpt Pfam 3018 3051
IPR001680 WD40_rpt Pfam 2953 2989
IPR011993 PH-like_dom_sf Gene3D 2361 2500
IPR001680 WD40_rpt ProSiteProfiles 2958 2999
IPR023362 PH-BEACH_dom CDD 2362 2507
IPR031570 NBEA/BDCP_DUF4704 Pfam 1300 1574
IPR000409 BEACH_dom SMART 2540 2818
IPR023362 PH-BEACH_dom Pfam 2369 2500
IPR000409 BEACH_dom Pfam 2541 2818
IPR011989 ARM-like Gene3D 750 1052
IPR036322 WD40_repeat_dom_sf SUPERFAMILY 2927 3185
IPR000409 BEACH_dom CDD 2541 2818
IPR036372 BEACH_dom_sf SUPERFAMILY 2521 2818
IPR000409 BEACH_dom ProSiteProfiles 2528 2818
IPR036372 BEACH_dom_sf Gene3D 2531 2818
IPR001680 WD40_rpt SMART 2951 2990
IPR001680 WD40_rpt SMART 3100 3138
IPR001680 WD40_rpt SMART 3141 3179
IPR001680 WD40_rpt SMART 3016 3055
IPR015943 WD40/YVTN_repeat-like_dom_sf Gene3D 2912 3194

No CAZYmes available for this sequence

No external refs found!