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  5. Sobic.010G258600.1

Sobic.010G258600.1


Description : Pentatricopeptide repeat (PPR) superfamily protein


Gene families : OG_01_0016051 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0016051_tree

Sequence : cds (download), rna (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.010G258600.1
Neighborhood Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.010G258600.1
Cluster Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_313
Cluster Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_40


Type GO Term Name Evidence Source
MF GO:0005515 protein binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR002885 Pentatricopeptide_rpt Pfam 172 216
IPR002885 Pentatricopeptide_rpt Pfam 273 320
IPR002885 Pentatricopeptide_rpt TIGRFAM 146 171
IPR002885 Pentatricopeptide_rpt TIGRFAM 310 343
IPR002885 Pentatricopeptide_rpt TIGRFAM 276 308
IPR002885 Pentatricopeptide_rpt TIGRFAM 174 207
IPR011990 TPR-like_helical_dom_sf Gene3D 126 226
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 273 307
IPR002885 Pentatricopeptide_rpt Pfam 347 371
IPR002885 Pentatricopeptide_rpt Pfam 146 171
IPR011990 TPR-like_helical_dom_sf Gene3D 231 462
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 172 206

No CAZYmes available for this sequence

No external refs found!