Sevir.9G090900.7

Description : RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain

Gene families : OG_01_0000416 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0000416_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Setaria viridis coexpression network - v0.2 (X-meeting 2023): Sevir.9G090900.7
Neighborhood	Setaria viridis coexpression network - Anderson et al (2021): Sevir.9G090900.7
Cluster	Setaria viridis HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_181
Cluster	Setaria viridis HCCA coexpression clusters - Anderson et al (2021): Cluster_81

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	ISM	GOs from InterProScan
MF	GO:0003723	RNA binding	ISM	GOs from InterProScan
MF	GO:0005488	binding	None	Extended
MF	GO:0008270	zinc ion binding	ISM	GOs from InterProScan
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR000504	RRM_dom	SMART	8	81
IPR000504	RRM_dom	ProSiteProfiles	7	85
IPR001878	Znf_CCHC	Pfam	132	147
IPR000504	RRM_dom	Pfam	10	78
IPR036875	Znf_CCHC_sf	SUPERFAMILY	113	153
IPR001878	Znf_CCHC	ProSiteProfiles	132	147
IPR001878	Znf_CCHC	SMART	131	147
IPR012677	Nucleotide-bd_a/b_plait_sf	Gene3D	1	108
IPR035979	RBD_domain_sf	SUPERFAMILY	4	117

No CAZYmes available for this sequence

External Links

No external refs found!