Sevir.9G098000.3

Description : serine transhydroxymethyltransferase 1

Gene families : OG_01_0012794 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0012794_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Setaria viridis coexpression network - v0.2 (X-meeting 2023): Sevir.9G098000.3
Neighborhood	Setaria viridis coexpression network - Anderson et al (2021): Sevir.9G098000.3
Cluster	Setaria viridis HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_97
Cluster	Setaria viridis HCCA coexpression clusters - Anderson et al (2021): Cluster_118

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	ISM	GOs from InterProScan
MF	GO:0004372	glycine hydroxymethyltransferase activity	ISM	GOs from InterProScan
MF	GO:0005488	binding	None	Extended
BP	GO:0006082	organic acid metabolic process	None	Extended
BP	GO:0006520	amino acid metabolic process	None	Extended
BP	GO:0006544	glycine metabolic process	None	Extended
BP	GO:0006545	glycine biosynthetic process	None	Extended
BP	GO:0006563	L-serine metabolic process	None	Extended
BP	GO:0006575	cellular modified amino acid metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006730	one-carbon metabolic process	None	Extended
BP	GO:0006760	folic acid-containing compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0008652	amino acid biosynthetic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009069	serine family amino acid metabolic process	None	Extended
BP	GO:0009070	serine family amino acid biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016053	organic acid biosynthetic process	None	Extended
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016741	transferase activity, transferring one-carbon groups	None	Extended
MF	GO:0016742	hydroxymethyl-, formyl- and related transferase activity	None	Extended
BP	GO:0019264	glycine biosynthetic process from serine	ISM	GOs from InterProScan
BP	GO:0019752	carboxylic acid metabolic process	None	Extended
MF	GO:0019842	vitamin binding	None	Extended
MF	GO:0030170	pyridoxal phosphate binding	ISM	GOs from InterProScan
BP	GO:0035999	tetrahydrofolate interconversion	ISM	GOs from InterProScan
MF	GO:0036094	small molecule binding	None	Extended
BP	GO:0042558	pteridine-containing compound metabolic process	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0043436	oxoacid metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044281	small molecule metabolic process	None	Extended
BP	GO:0044283	small molecule biosynthetic process	None	Extended
BP	GO:0046394	carboxylic acid biosynthetic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0046653	tetrahydrofolate metabolic process	None	Extended
MF	GO:0070279	vitamin B6 binding	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
BP	GO:1901605	alpha-amino acid metabolic process	None	Extended
BP	GO:1901607	alpha-amino acid biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR019798	Ser_HO-MeTrfase_PLP_BS	ProSitePatterns	274	290
IPR001085	Ser_HO-MeTrfase	PIRSF	32	508
IPR001085	Ser_HO-MeTrfase	Hamap	50	503
IPR039429	SHMT-like_dom	Pfam	51	448
IPR001085	Ser_HO-MeTrfase	CDD	52	476
IPR015424	PyrdxlP-dep_Trfase	SUPERFAMILY	41	504
IPR015421	PyrdxlP-dep_Trfase_major	Gene3D	80	353
IPR015422	PyrdxlP-dep_Trfase_small	Gene3D	55	500
IPR001085	Ser_HO-MeTrfase	PANTHER	19	512

No CAZYmes available for this sequence

External Links

No external refs found!

Sevir.9G098000.3

Expression Profile

Co-expression Networks

Functional Annotation