Sevir.9G112300.1

Description : phytochrome A

Gene families : OG_01_0012701 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0012701_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Setaria viridis coexpression network - v0.2 (X-meeting 2023): Sevir.9G112300.1
Neighborhood	Setaria viridis coexpression network - Anderson et al (2021): Sevir.9G112300.1
Cluster	Setaria viridis HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_9
Cluster	Setaria viridis HCCA coexpression clusters - Anderson et al (2021): Cluster_20

Type	GO Term	Name	Evidence	Source
MF	GO:0000155	phosphorelay sensor kinase activity	ISM	GOs from InterProScan
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004672	protein kinase activity	None	Extended
MF	GO:0004673	protein histidine kinase activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	ISM	GOs from InterProScan
BP	GO:0006355	regulation of DNA-templated transcription	ISM	GOs from InterProScan
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0007165	signal transduction	ISM	GOs from InterProScan
BP	GO:0007602	phototransduction	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009314	response to radiation	None	Extended
BP	GO:0009416	response to light stimulus	None	Extended
BP	GO:0009581	detection of external stimulus	None	Extended
BP	GO:0009582	detection of abiotic stimulus	None	Extended
BP	GO:0009583	detection of light stimulus	None	Extended
BP	GO:0009584	detection of visible light	ISM	GOs from InterProScan
BP	GO:0009585	red, far-red light phototransduction	ISM	GOs from InterProScan
BP	GO:0009605	response to external stimulus	None	Extended
BP	GO:0009628	response to abiotic stimulus	None	Extended
MF	GO:0009881	photoreceptor activity	ISM	GOs from InterProScan
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
MF	GO:0016301	kinase activity	None	Extended
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	None	Extended
MF	GO:0016773	phosphotransferase activity, alcohol group as acceptor	None	Extended
MF	GO:0016775	phosphotransferase activity, nitrogenous group as acceptor	None	Extended
BP	GO:0017006	protein-tetrapyrrole linkage	ISM	GOs from InterProScan
BP	GO:0018298	obsolete protein-chromophore linkage	ISM	GOs from InterProScan
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0036211	protein modification process	None	Extended
MF	GO:0038023	signaling receptor activity	None	Extended
MF	GO:0042802	identical protein binding	None	Extended
MF	GO:0042803	protein homodimerization activity	ISM	GOs from InterProScan
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
MF	GO:0046983	protein dimerization activity	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0051606	detection of stimulus	None	Extended
MF	GO:0060089	molecular transducer activity	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0140096	catalytic activity, acting on a protein	None	Extended
MF	GO:0140299	small molecule sensor activity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR003661	HisK_dim/P	Pfam	901	953
IPR003018	GAF	Pfam	220	403
IPR000014	PAS	ProSiteProfiles	620	690
IPR035965	PAS-like_dom_sf	SUPERFAMILY	75	187
IPR013767	PAS_fold	Pfam	753	875
IPR013767	PAS_fold	Pfam	623	737
IPR003594	HATPase_C	Pfam	1011	1122
IPR029016	GAF-like_dom_sf	Gene3D	200	566
IPR001294	Phytochrome	PRINTS	134	156
IPR001294	Phytochrome	PRINTS	234	253
IPR001294	Phytochrome	PRINTS	735	755
IPR001294	Phytochrome	PRINTS	319	340
IPR001294	Phytochrome	PRINTS	520	539
IPR001294	Phytochrome	PRINTS	623	639
IPR001294	Phytochrome	PRINTS	715	732
IPR001294	Phytochrome	PRINTS	642	657
IPR001294	Phytochrome	PRINTS	435	455
IPR001294	Phytochrome	PRINTS	553	571
IPR016132	Phyto_chromo_attachment	ProSiteProfiles	219	394
IPR013515	Phytochrome_cen-reg	Pfam	418	591
IPR012129	Phytochrome_A-E	PIRSF	1	1130
IPR035965	PAS-like_dom_sf	SUPERFAMILY	767	873
IPR000014	PAS	SMART	622	688
IPR000014	PAS	SMART	752	821
IPR000014	PAS	CDD	631	737
IPR013654	PAS_2	Pfam	70	186
IPR000014	PAS	CDD	764	875
IPR003661	HisK_dim/P	SMART	897	962
IPR000014	PAS	ProSiteProfiles	753	834
IPR035965	PAS-like_dom_sf	SUPERFAMILY	626	733
IPR000014	PAS	TIGRFAM	627	741
IPR036890	HATPase_C_sf	Gene3D	940	1117
IPR003594	HATPase_C	SMART	1011	1124
IPR003661	HisK_dim/P	CDD	897	955
IPR043150	Phytochrome_PHY_sf	Gene3D	409	583
IPR005467	His_kinase_dom	ProSiteProfiles	904	1124
IPR003018	GAF	SMART	219	414
IPR013516	Phyto_chromo_BS	ProSitePatterns	319	328
IPR036890	HATPase_C_sf	SUPERFAMILY	963	1117

No CAZYmes available for this sequence

External Links

No external refs found!

Sevir.9G112300.1

Expression Profile

Co-expression Networks

Functional Annotation