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  5. Sevir.9G114900.1

Sevir.9G114900.1


Description : Vacuolar sorting protein 39


Gene families : OG_01_0011547 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0011547_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria viridis coexpression network - v0.2 (X-meeting 2023): Sevir.9G114900.1
Neighborhood Setaria viridis coexpression network - Anderson et al (2021): Sevir.9G114900.1 No neighbors in network
Cluster Setaria viridis HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_12


Type GO Term Name Evidence Source
BP GO:0006886 intracellular protein transport ISM GOs from InterProScan
BP GO:0016192 vesicle-mediated transport ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR001180 CNH_dom Pfam 85 287
IPR019452 VPS39/TGF_beta_rcpt-assoc_1 Pfam 508 618
IPR000547 Clathrin_H-chain/VPS_repeat ProSiteProfiles 613 795
IPR032914 Vam6/VPS39/TRAP1 PANTHER 1 997
IPR019453 VPS39/TGF_beta_rcpt-assoc_2 Pfam 872 980
IPR000547 Clathrin_H-chain/VPS_repeat Pfam 637 769
IPR001180 CNH_dom ProSiteProfiles 16 293

No CAZYmes available for this sequence

No external refs found!